From the beginning of all, there were battle gods called "Gourikishin" who team up with human partners they revere as "Oyakata" as they go through battle called "Kamizumo". Now in the present, an elementary student named Dai Mugen encounters one god name "Koutetsu" who fell from the sky and ask, "Please become by Oyakata and together let's kamizumo!!"
In the near future, Panther Claw has destroyed the Tokyo Metropolitan Government. The capital government is forced to shift into the provinces. During this time, Honey Kisaragi has transferred to St. Chapel Academy as part of a special course. This special course is the "New Generation Honey" project, where students, including Honey, become Cutie Honey.